PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC8230_p1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 800aa    MW: 87569.5 Da    PI: 5.8191
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC8230_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.81.7e-12395441455
                 HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 +h e+Er+RR+++N++f  Lr ++P+       K++Ka+ L  A+ YI++L+
  RrC8230_p1 395 NHVEAERQRREKLNQRFYALRAVVPNV-----SKMDKASLLGDAIAYINELE 441
                 799***********************6.....5****************995 PP

2HLH20.49.4e-07775800429
                 HHHHHHHHHHHHHHHHHHHHHCTSCC CS
         HLH   4 ahnerErrRRdriNsafeeLrellPk 29 
                 +h e+Er+RR+++N++f  Lr ++P+
  RrC8230_p1 775 NHVEAERQRREKLNQRFYALRAVVPN 800
                 799*********************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142155.7E-5744228IPR025610Transcription factor MYC/MYB N-terminal
SuperFamilySSF474597.85E-17390456IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.66E-14390441No hitNo description
PROSITE profilePS5088817.111391440IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.6E-10395441IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.4E-17395461IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-15397446IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF142153.4E-10565608IPR025610Transcription factor MYC/MYB N-terminal
CDDcd000838.89E-7770800No hitNo description
PROSITE profilePS5088811.458771800IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.67E-7771800IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.0E-6775800IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009269Biological Processresponse to desiccation
GO:0009611Biological Processresponse to wounding
GO:0009737Biological Processresponse to abscisic acid
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0009963Biological Processpositive regulation of flavonoid biosynthetic process
GO:0010200Biological Processresponse to chitin
GO:0043619Biological Processregulation of transcription from RNA polymerase II promoter in response to oxidative stress
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051090Biological Processregulation of sequence-specific DNA binding transcription factor activity
GO:2000068Biological Processregulation of defense response to insect
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 800 aa     Download sequence    Send to blast
MRNLWATDDN TSMMEAFLTS SDMSALWLQE TSATAPAGFN QETLQQRLQA LIEGTNEGWT  60
YAIFWQPSYD FSGDSVLGWG DGYYKGEEDK GKPKQRSTPL PFSTPADQEY RKKVLRELNS  120
LISGGGGPVD DAVDEEVTDT EWFFLVSMTQ SFASGAGLAG KAFSTGNVVW VSGSDQLSGS  180
SCERAKQGGV FGMQTIACIP SVNGVVELGS TEQIRRSSDL MNKVRLLFNF DVGTNWNLQG  240
ENNPSVWIND PIGASEPGNG QFSSKFENGG SSSTITGNPN HDSTLSPVHS QTLNPNFNNN  300
FSGEMNFSTS SKPRPGEILS FGNNGKRSSM NPDPIQFENK RKNSLGLIDD KVLSFGGGGE  360
TDHSDLEASV VKETPEKRPK KRGRKPANGK EEPLNHVEAE RQRREKLNQR FYALRAVVPN  420
VSKMDKASLL GDAIAYINEL ELNVNKTESE KIKIKNQLEE VKMELAGRKA STCGDLSSSS  480
SSSSATAPVG MEIEVKVIGW DAMIRVESSK RNYPAARLMS ALMDLELEVS HASMSVVNDL  540
MIQQATVKMG FRIYTQDQLR ASLISKIGGV FGMQTIACIP SVNGVVELGS TEQIRRSSDL  600
MNKVRLLFNF DVGTNWNLQG ENNPSVWIND PIGASEPGNG QFSSKFENGG SSSTITGNPN  660
HDSTLSPVHS QTLNPNFNNN FSGEMNFSTS SKPRPGEILS FGNNGKRSSM NPDPIQFENK  720
RKNSLGLIDD KVLSFGGGGE TDHSDLEASV VKETPEKRPK KRGRKPANGK EEPLNHVEAE  780
RQRREKLNQR FYALRAVVPN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rru_A1e-7132245227Transcription factor MYC3
4ywc_A1e-7132245227Transcription factor MYC3
4ywc_B1e-7132245227Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1756764KRPKKRGRK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00084PBMTransfer from AT1G32640Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013605028.10.0PREDICTED: transcription factor MYC2-like
SwissprotQ392040.0MYC2_ARATH; Transcription factor MYC2
TrEMBLA0A0D3DKU70.0A0A0D3DKU7_BRAOL; Uncharacterized protein
STRINGBra010178.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12652896
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32640.10.0bHLH family protein